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usr/bin/trim_sff_primers.py                             contrib/science/qiime
usr/bin/truncate_fasta_qual_files.py                    contrib/science/qiime
usr/bin/upgma_cluster.py                                contrib/science/qiime
.
37a
usr/bin/quality_scores_plot.py                          contrib/science/qiime
.
36a
usr/bin/add_taxa.py                                     contrib/science/qiime
usr/bin/adjust_seq_orientation.py                       contrib/science/qiime
usr/bin/align_seqs.py                                   contrib/science/qiime
usr/bin/alpha_diversity.py                              contrib/science/qiime
usr/bin/alpha_rarefaction.py                            contrib/science/qiime
usr/bin/assign_taxonomy.py                              contrib/science/qiime
usr/bin/beta_diversity.py                               contrib/science/qiime
usr/bin/beta_diversity_through_3d_plots.py              contrib/science/qiime
usr/bin/beta_significance.py                            contrib/science/qiime
usr/bin/blast_wrapper.py                                contrib/science/qiime
usr/bin/categorized_dist_scatterplot.py                 contrib/science/qiime
usr/bin/check_id_map.py                                 contrib/science/qiime
usr/bin/collate_alpha.py                                contrib/science/qiime
usr/bin/compare_3d_plots.py                             contrib/science/qiime
usr/bin/consensus_tree.py                               contrib/science/qiime
usr/bin/convert_otu_table_to_unifrac_sample_mapping.py  contrib/science/qiime
usr/bin/convert_unifrac_sample_mapping_to_otu_table.py  contrib/science/qiime
usr/bin/denoise.py                                      contrib/science/qiime
usr/bin/dissimilarity_mtx_stats.py                      contrib/science/qiime
usr/bin/exclude_seqs_by_blast.py                        contrib/science/qiime
usr/bin/extract_seqs_by_sample_id.py                    contrib/science/qiime
usr/bin/filter_alignment.py                             contrib/science/qiime
usr/bin/filter_by_metadata.py                           contrib/science/qiime
usr/bin/filter_fasta.py                                 contrib/science/qiime
usr/bin/filter_otu_table.py                             contrib/science/qiime
usr/bin/filter_otus_by_sample.py                        contrib/science/qiime
usr/bin/fix_arb_fasta.py                                contrib/science/qiime
usr/bin/identify_chimeric_seqs.py                       contrib/science/qiime
usr/bin/jackknifed_beta_diversity.py                    contrib/science/qiime
usr/bin/jackknifed_upgma.py                             contrib/science/qiime
usr/bin/make_2d_plots.py                                contrib/science/qiime
usr/bin/make_3d_plots.py                                contrib/science/qiime
usr/bin/make_bootstrapped_tree.py                       contrib/science/qiime
usr/bin/make_distance_histograms.py                     contrib/science/qiime
usr/bin/make_fastq.py                                   contrib/science/qiime
usr/bin/make_library_id_lists.py                        contrib/science/qiime
usr/bin/make_otu_heatmap_html.py                        contrib/science/qiime
usr/bin/make_otu_network.py                             contrib/science/qiime
usr/bin/make_otu_table.py                               contrib/science/qiime
usr/bin/make_per_library_sff.py                         contrib/science/qiime
usr/bin/make_phylogeny.py                               contrib/science/qiime
usr/bin/make_pie_charts.py                              contrib/science/qiime
usr/bin/make_prefs_file.py                              contrib/science/qiime
usr/bin/make_qiime_py_file.py                           contrib/science/qiime
usr/bin/make_qiime_rst_file.py                          contrib/science/qiime
usr/bin/make_rarefaction_plots.py                       contrib/science/qiime
usr/bin/merge_denoiser_output.py                        contrib/science/qiime
usr/bin/merge_mapping_files.py                          contrib/science/qiime
usr/bin/merge_otu_maps.py                               contrib/science/qiime
usr/bin/merge_otu_tables.py                             contrib/science/qiime
usr/bin/multiple_rarefactions.py                        contrib/science/qiime
usr/bin/multiple_rarefactions_even_depth.py             contrib/science/qiime
usr/bin/otu_category_significance.py                    contrib/science/qiime
usr/bin/parallel_align_seqs_pynast.py                   contrib/science/qiime
usr/bin/parallel_alpha_diversity.py                     contrib/science/qiime
usr/bin/parallel_assign_taxonomy_blast.py               contrib/science/qiime
usr/bin/parallel_assign_taxonomy_rdp.py                 contrib/science/qiime
usr/bin/parallel_beta_diversity.py                      contrib/science/qiime
usr/bin/parallel_blast.py                               contrib/science/qiime
usr/bin/parallel_identify_chimeric_seqs.py              contrib/science/qiime
usr/bin/parallel_multiple_rarefactions.py               contrib/science/qiime
usr/bin/parallel_pick_otus_blast.py                     contrib/science/qiime
usr/bin/parallel_pick_otus_uclust_ref.py                contrib/science/qiime
usr/bin/per_library_stats.py                            contrib/science/qiime
usr/bin/pick_otus.py                                    contrib/science/qiime
usr/bin/pick_otus_through_otu_table.py                  contrib/science/qiime
usr/bin/pick_reference_otus_through_otu_table.py        contrib/science/qiime
usr/bin/pick_rep_set.py                                 contrib/science/qiime
usr/bin/plot_rank_abundance_graph.py                    contrib/science/qiime
usr/bin/plot_taxa_summary.py                            contrib/science/qiime
usr/bin/poller.py                                       contrib/science/qiime
usr/bin/poller_example.py                               contrib/science/qiime
usr/bin/pool_by_metadata.py                             contrib/science/qiime
usr/bin/principal_coordinates.py                        contrib/science/qiime
usr/bin/print_qiime_config.py                           contrib/science/qiime
usr/bin/process_sff.py                                  contrib/science/qiime
.
