Usage:
  fastq-dump [options] [ -A ] 
  fastq-dump [options] 

        -A, --accession             Accession.

Options:

        -D, --table-path            Path to accession data.
        -O, --outdir                Output directory. Default: '.'
        -N, --minSpotId             Minimum spot id to output.
        -X, --maxSpotId             Maximum spot id to output.
        -G, --spot-group            Split into files by SPOT_GROUP (member name).
        -GL, --spot-group-list [name,[name...]] Filter by SPOT_GROUP (member).
        -R, --read-filter [pass|reject|criteria|redacted] Split into files by READ_FILTER value, optional filter by a value.
        -T, --group-in-dirs         Split into subdirectories instead of files.
        -K, --keep-empty-files      Do not delete empty files.
        -L, --log-level             Logging level: fatal|sys|int|err|warn|info.
        -H, --help                  Prints this message.

Format options:

        -M, --minReadLen            Minimum read length to output. Default: 25
        -W, --noclip                Do not clip quality left and right for spot.

        -F, --origfmt               Excludes SRR accession & length on defline.
        -C, --dumpcs [cskey]        Dump color space sequence (default for ABI SOLID), single letter color space key is optional.
        -B, --dumpbase              Dump base sequence (default for other than ABI SOLID).
        -Q, --offset                Offset to use for quality conversion. Default: 33
        -I, --readids               Append read id after spot id as 'accession.spot.readid' on defline.
        -E, --no-qual-filter        Disable filtering by leading/trailng low quality.
        -TR, --dump-technical        Include technical reads.
        -SF, --complete              Dump ALL reads in a single file.
        -DB, --defline-seq           sequence defline format specification. String of characters and/or variables.

                Variables are one of:
                  $ac - accession, $si - spot id, $sn - spot name, $sg - spot group (barcode),
                  $sl - spot length in bases, $ri - read id, $rn - read name, $rl - read length in bases.
                '[]' could be used for an optional output: if all variables in [] yield empty values whole group is not printed.
                Empty value is empty string or 0 for numeric variables.
                Ex: @$sn[_$rn]/$ri - '_$rn' is omitted if name is empty

        -DQ, --defline-qual          quailty defline format specification. If -DB is provided but -DQommitted, -DB value is used.
        -HS, --helicos               Helicos style.
        -FA, --fasta                 Fasta only, no qualities.
        -alt [n]                    alternative formatting version [1].
Version: 2.0.4